MRIQC: individual T1w report

Summary

Subject ID: 048_ControlPre.
Date and time: 2018-05-06, 23:14.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.25716636488927747
cnr			4.494466125831139
efc			0.5731119162083617
fber			87.15098571777344
fwhm	avg		3.7634666666666665
fwhm	x		3.64931
fwhm	y		3.98954
fwhm	z		3.65155
icvs	csf		0.1861712178595969
icvs	gm		0.4871050596049164
icvs	wm		0.3267237225354867
inu	med		0.979128360748291
inu	range		0.3456488281488419
qi	1		0.0
qi	2		0.0033337073761517647
rpve	csf		30.14205199076612
rpve	gm		13.400887052760295
rpve	wm		22.05318248345455
size	x		180
size	y		256
size	z		256
snr	csf		2.17530341490017
snr	gm		10.368600624323086
snr	total		8.859249207914514
snr	wm		14.033843584520287
snrd	csf		12.168854985577232
snrd	gm		27.152417291936565
snrd	total		28.547057808356197
snrd	wm		46.31990114755479
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.5151323365730556
summary	bg	mad	14.143783569335938
summary	bg	mean	50.44358825683594
summary	bg	median	49.23197937011719
summary	bg	n	3001803.0
summary	bg	p05	29.72140712738037
summary	bg	p95	75.47451400756836
summary	bg	stdv	14.259730339050293
summary	csf	k	0.5848717129626948
summary	csf	mad	129.60922241210938
summary	csf	mean	277.2073974609375
summary	csf	median	262.7142333984375
summary	csf	n	6626.0
summary	csf	p05	114.30176162719727
summary	csf	p95	483.95569610595703
summary	csf	stdv	120.76219177246094
summary	gm	k	0.4073482381816582
summary	gm	mad	54.135887145996094
summary	gm	mean	585.8908081054688
summary	gm	median	586.1953735351562
summary	gm	n	36627.0
summary	gm	p05	492.7915924072266
summary	gm	p95	677.7800903320311
summary	gm	stdv	56.53485870361328
summary	wm	k	0.8516951868946143
summary	wm	mad	52.281639099121094
summary	wm	mean	983.1405639648438
summary	wm	median	1000.0034790039062
summary	wm	n	139785.0
summary	wm	p05	831.4878662109376
summary	wm	p95	1070.61396484375
summary	wm	stdv	71.25630950927734
tpm	overlap	csf	0.19601576030254364
tpm	overlap	gm	0.5274595022201538
tpm	overlap	wm	0.5113272666931152
wm2max			0.6845979520200646

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	78019227f4a2c613b6f632e51395992d
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.