MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.25716636488927747
cnr4.494466125831139
efc0.5731119162083617
fber87.15098571777344
fwhmavg3.7634666666666665
fwhmx3.64931
fwhmy3.98954
fwhmz3.65155
icvscsf0.1861712178595969
icvsgm0.4871050596049164
icvswm0.3267237225354867
inumed0.979128360748291
inurange0.3456488281488419
qi10.0
qi20.0033337073761517647
rpvecsf30.14205199076612
rpvegm13.400887052760295
rpvewm22.05318248345455
sizex180
sizey256
sizez256
snrcsf2.17530341490017
snrgm10.368600624323086
snrtotal8.859249207914514
snrwm14.033843584520287
snrdcsf12.168854985577232
snrdgm27.152417291936565
snrdtotal28.547057808356197
snrdwm46.31990114755479
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.5151323365730556
summarybgmad14.143783569335938
summarybgmean50.44358825683594
summarybgmedian49.23197937011719
summarybgn3001803.0
summarybgp0529.72140712738037
summarybgp9575.47451400756836
summarybgstdv14.259730339050293
summarycsfk0.5848717129626948
summarycsfmad129.60922241210938
summarycsfmean277.2073974609375
summarycsfmedian262.7142333984375
summarycsfn6626.0
summarycsfp05114.30176162719727
summarycsfp95483.95569610595703
summarycsfstdv120.76219177246094
summarygmk0.4073482381816582
summarygmmad54.135887145996094
summarygmmean585.8908081054688
summarygmmedian586.1953735351562
summarygmn36627.0
summarygmp05492.7915924072266
summarygmp95677.7800903320311
summarygmstdv56.53485870361328
summarywmk0.8516951868946143
summarywmmad52.281639099121094
summarywmmean983.1405639648438
summarywmmedian1000.0034790039062
summarywmn139785.0
summarywmp05831.4878662109376
summarywmp951070.61396484375
summarywmstdv71.25630950927734
tpmoverlapcsf0.19601576030254364
tpmoverlapgm0.5274595022201538
tpmoverlapwm0.5113272666931152
wm2max0.6845979520200646

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum78019227f4a2c613b6f632e51395992d
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.